BEAT

DOI: 10.18129/B9.bioc.BEAT  

BEAT - BS-Seq Epimutation Analysis Toolkit

Bioconductor version: Release (3.16)

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")

 

PDF	R Script	Analysing single-cell BS-Seq data with the "BEAT" package
PDF		Reference Manual

Details

biocViews	DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version	1.36.0
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	LGPL (>= 3.0)
Depends	R (>= 2.13.0)
Imports	GenomicRanges, ShortRead, Biostrings, BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BEAT_1.36.0.tar.gz
Windows Binary	BEAT_1.36.0.zip
macOS Binary (x86_64)	BEAT_1.36.0.tgz
macOS Binary (arm64)	BEAT_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BEAT
Bioc Package Browser	https://code.bioconductor.org/browse/BEAT/
Package Short Url	https://bioconductor.org/packages/BEAT/
Package Downloads Report	Download Stats